Yutaka Nakashimada

Last Updated :2024/06/04

Affiliations, Positions
Graduate School of Integrated Sciences for Life, Professor
Web Site
E-mail
nyutakahiroshima-u.ac.jp

Basic Information

Major Professional Backgrounds

  • 1995/10, 2001/03, Hiroshima University, Department of Fermentation technology, Faculty of Engineering, Research Associate
  • 2001/04, 2006/09, Hiroshima University, Department of Molecular Biotechnology、 Graduate School of Advanced Sciences of Matter, Research Associate
  • 2006/10, 2008/09, Tokyo University of Agriculture and Technology, Department of Chemical Engineering、 Graduate School of Technology, Associate Professor
  • 2008/10, 2014/08, Hiroshima University, Department of Molecular Biotechnology、 Graduate School of Advanced Sciences of Matter, Associate Professor
  • 2014/09, 2019/03/31, Hiroshima University, Department of Molecular Biotechnology,Graduate School of Advanced Sciences of Matter, Professor

Educational Backgrounds

  • Nagoya University, Graduate School, Division of Engineering, Chemical Engineering, Japan, 1993/04, 1995/09

Academic Degrees

  • Doctor of Engineering, Nagoya University
  • Master of Engineering, Nagoya University

Educational Activity

  • [Bachelor Degree Program] School of Engineering : Cluster 3(Applied Chemistry, Biotechnology and Chemical Engineering) : Program of Biotechnology
  • [Master's Program] Graduate School of Integrated Sciences for Life : Division of Integrated Sciences for Life : Program of Biotechnology
  • [Doctoral Program] Graduate School of Integrated Sciences for Life : Division of Integrated Sciences for Life : Program of Biotechnology

Research Fields

  • Engineering;Process / Chemical engineering;Biofunction / Bioprocess

Research Keywords

  • metabolic engineering
  • methane fermentation
  • low moisture content
  • organic wastes

Educational Activity

Course in Charge

  1. 2024, Liberal Arts Education Program1, 1Term, Carbon-neutral Science and Technology
  2. 2024, Liberal Arts Education Program1, 1Term, Introductory Seminar for First-Year Students
  3. 2024, Undergraduate Education, 2Term, Introduction to Applied Chemistry, Chemical Engineering and Biotechnology
  4. 2024, Undergraduate Education, 2Term, Introduction to Fundamental Industry
  5. 2024, Undergraduate Education, 1Term, Fermentation Technology
  6. 2024, Undergraduate Education, Intensive, Fermentation process engineeringII
  7. 2024, Undergraduate Education, Second Semester, Group Discussion of Current Biotechnology Topics
  8. 2024, Undergraduate Education, Year, Graduation Thesis
  9. 2024, Undergraduate Education, 3Term, Advanced Biofuel Engineering
  10. 2024, Graduate Education (Master's Program) , Academic Year, Seminar in Biotechnology
  11. 2024, Graduate Education (Master's Program) , 1Term, Exercises in Biotechnology A
  12. 2024, Graduate Education (Master's Program) , 2Term, Exercises in Biotechnology A
  13. 2024, Graduate Education (Master's Program) , 3Term, Exercises in Biotechnology B
  14. 2024, Graduate Education (Master's Program) , 4Term, Exercises in Biotechnology B
  15. 2024, Graduate Education (Master's Program) , Academic Year, Research for Academic Degree Dissertation in Biotechnology
  16. 2024, Graduate Education (Doctoral Program) , Academic Year, Research for Academic Degree Dissertation in Integrated Life Sciences
  17. 2024, Graduate Education (Master's Program) , 3Term, Advanced Biofuel Engineering

Research Activities

Academic Papers

  1. Isopropanol production via the thermophilic bioconversion of sugars and syngas using metabolically engineered Moorella thermoacetica, BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS, 17(1), 20240128
  2. Characterization of Biogenic PbS Quantum Dots, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 24(18), 202309
  3. A targeted liquid cultivation method for previously uncultured non-colony forming microbes, FRONTIERS IN MICROBIOLOGY, 14, 20230609
  4. Enhancing acetone production from H2 and CO2 using supplemental electron acceptors in an engineered Moorella thermoacetica, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 136(1), 13-19, 202307
  5. Ignition timing effect on the combustion performance of hydrogen addition in methane fermentation gas in a local energy system, FUEL, 324, 20220915
  6. Reversible Hydrogenase Activity Confers Flexibility to Balance Intracellular Redox in Moorella thermoacetica, Frontiers in Microbiology, 13, 1-12, 20220312
  7. Removal of Acetic Acid from Bacterial Culture Media by Adsorption onto a Two-Component Composite Polymer Gel, GELS, 8(3), 202203
  8. Experimental investigation on performance of hydrogen additions in natural gas combustion combined with CO2, INTERNATIONAL JOURNAL OF HYDROGEN ENERGY, 46(70), 34958-34969, 20211011
  9. Single-Cell Time-Lapse Observation Reveals Cell Shrinkage upon Cell Death in Batch Culture of Saccharomyces cerevisiae, MBIO, 12(6), 2021
  10. Reaction Rate of Hydrothermal Ammonia Production from Chicken Manure, ACS OMEGA, 6(36), 23442-23446, 20210914
  11. Visualization of Gene Reciprocity among Lactic Acid Bacteria in Yogurt by RNase H-Assisted Rolling Circle Amplification-Fluorescence In Situ Hybridization, MICROORGANISMS, 9(6), 202106
  12. Metabolic engineering of Moorella thermoacetica for thermophilic bioconversion of gaseous substrates to a volatile chemical, AMB EXPRESS, 11(1), 20210423
  13. Improvement of fatty acid productivity of thraustochytrid, Aurantiochytrium sp. by genome editing, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 131(4), 373-380, 202104
  14. Effects of hydrogen and carbon dioxide on the laminar burning velocities of methane-air mixtures, JOURNAL OF THE ENERGY INSTITUTE, 99, 178-185, 20211201
  15. Autotrophic growth and ethanol production enabled by diverting acetate flux in the metabolically engineered Moorella thermoacetica, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 132(6), 569-574, 20211201
  16. Optimization of Biomethane Production via Fermentation of Chicken Manure Using Marine Sediment: A Modeling Approach Using Response Surface Methodology, INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 18(22), 20211101
  17. Direct detection of mRNA expression in microbial cells by fluorescence in situ hybridization using RNase H-assisted rolling circle amplification, SCIENTIFIC REPORTS, 10(1), 20200615
  18. Combined simultaneous enzymatic saccharification and comminution (SESC) and anaerobic digestion for sustainable biomethane generation from wood lignocellulose and the biochemical characterization of residual sludge solid, BIORESOURCE TECHNOLOGY, 300, 202003
  19. Ethanol yield and sugar usability in thermophilic ethanol production from lignocellulose hydrolysate by genetically engineered Moorella thermoacetica, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 129(2), 160-164, 202002
  20. Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment, BIOTECHNOLOGY REPORTS, 24, e00366, 20190824
  21. The mechanosensitive channel YbdG from Escherichia coli has a role in adaptation to osmotic up-shock, JOURNAL OF BIOLOGICAL CHEMISTRY, 294(33), 12281-12292, 20190816
  22. Metabolite Profile Analysis of Aurantiochytrium limacinum SR21 Grown on Acetate-based Medium for Lipid Fermentation, JOURNAL OF OLEO SCIENCE, 68(6), 541-549, 201906
  23. Simultaneous enzymatic saccharification and comminution for the valorization of lignocellulosic biomass toward natural products, BMC BIOTECHNOLOGY, 18, 20181212
  24. Process Design and Evaluation of Supercritical Water Gasification of Tomato Residue in a Rural Area of Japan, JOURNAL OF THE JAPAN PETROLEUM INSTITUTE, 61(4), 213-218, 201807
  25. RNase H-assisted RNA-primed rolling circle amplification for targeted RNA sequence detection, SCIENTIFIC REPORTS, 8, 20180517
  26. Isolation of High Carotenoid-producing Aurantiochytrium sp Mutants and Improvement of Astaxanthin Productivity Using Metabolic Information, JOURNAL OF OLEO SCIENCE, 67(5), 571-578, 201805
  27. Efficient conversion of mannitol derived from brown seaweed to fructose for fermentation with a thraustochytrid, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 125(2), 180-184, 201802
  28. Negative chemotaxis of Ralstonia pseudosolanacearum to maleate and identification of the maleate chemosensory protein, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 124(6), 647-652, 201712
  29. Involvement of many chemotaxis sensors in negative chemotaxis to ethanol in Ralstonia pseudosolanacearum Ps29, MICROBIOLOGY-SGM, 163(12), 1880-1889, 201712
  30. Real-Time Mass Spectrometric Analysis of Hydrothermal Reaction Products, INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH, 56(36), 9993-9998, 20170913
  31. Identification of boric acid as a novel chemoattractant and elucidation of its chemoreceptor in Ralstonia pseudosolanacearum Ps29, SCIENTIFIC REPORTS, 7, 20170817
  32. Negative chemotaxis of Ralstonia pseudosolanacearum to maleate and identification of the maleate chemosensory protein., Journal of Bioscience and Bioengineering, 124(6), 647-652, 20170605
  33. In situ mass spectrometry of glucose decomposition under hydrothermal reactions, KOREAN JOURNAL OF CHEMICAL ENGINEERING, 34(5), 1524-1530, 201705
  34. Decomposition kinetics of uronic acids obtained from kelp under hydrothermal condition, JOURNAL OF THE ENERGY INSTITUTE, 90(2), 185-190, 201704
  35. Homolactic Acid Fermentation by the Genetically Engineered Thermophilic Homoacetogen Moorella thermoacetica ATCC 39073, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(8), 201704
  36. In-situ Mass Spectroscopic Analysis of Glucose Decomposition under Hydrothermal Condition: Quantitative Analysis for Reaction Kinetics, JOURNAL OF THE JAPAN PETROLEUM INSTITUTE, 60(2), 101-109, 201703
  37. Identification and characterization of chemosensors for D-malate, unnatural enantiomer of malate, in Ralstonia pseudosolanacearum, MICROBIOLOGY-SGM, 163(2), 233-242, 201702
  38. Quantitative In Situ Mass Spectrometry Analysis of Mannitol Decomposition Products under Hydrothermal Conditions, ENERGY & FUELS, 31(10), 10866-10873, 2017
  39. Thermophilic ethanol fermentation from lignocellulose hydrolysate by genetically engineered Moorella thermoacetica, BIORESOURCE TECHNOLOGY, 245, 1393-1399, 2017
  40. Improved methanization and microbial diversity during batch mode cultivation with repetition of substrate addition using defined organic matter and marine sediment inoculum at seawater salinity, BIORESOURCE TECHNOLOGY, 245, 833-840, 2017
  41. Homolactic Acid Fermentation by the Genetically Engineered Thermophilic Homoacetogen Moorella thermoacetica ATCC 39073 (vol 83, e00247-17, 2017), APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(11), 2017
  42. Kinetics of Sorbitol Decomposition under Hydrothermal Condition, JOURNAL OF THE JAPAN PETROLEUM INSTITUTE, 59(4), 149-154, 201607
  43. Decomposition Kinetics of Mannose, Its Sugar Alcohol, and Its Uronic Acid under Hydrothermal Condition, JOURNAL OF CHEMICAL ENGINEERING OF JAPAN, 49(7), 663-667, 201607
  44. Glycerol acts as alternative electron sink during syngas fermentation by thermophilic anaerobe Moorella thermoacetica, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 121(3), 268-273, 201603
  45. Dry Co-Digestion of Poultry Manure with Agriculture Wastes, APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 178(5), 932-946, 201603
  46. Isolation and characterization of bacterium producing lipid from short-chain fatty acids, BIORESOURCE TECHNOLOGY, 201, 215-221, 201602
  47. High-rate Fermentation of Acetate to Methane under Saline Condition by Aceticlastic Methanogens Immobilized in Marine Sediment, JOURNAL OF THE JAPAN PETROLEUM INSTITUTE, 55, 9-15, 201602
  48. Characterization of a halotolerant acetoclastic methanogen highly enriched from marine sediment and its application in removal of acetate, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 121(2), 196-202, 201602
  49. Semi-continuous methane production from undiluted brown algae using a halophilic marine microbial community, BIORESOURCE TECHNOLOGY, 200, 616-623, 201601
  50. Characterization of a halotolerant acetoclastic methanogen highly enriched from marine sediment and its application in removal of acetate, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 121(2), 196-202, 2016
  51. Bacterial community structure and predicted alginate metabolic pathway in an alginate-degrading bacterial consortium, JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 121(3), 286-292, 2016
  52. Dry Co-Digestion of Poultry Manure with Agriculture Wastes, APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 178(5), 932-946, 2016
  53. Kinetics of Sorbitol Decomposition under Hydrothermal Condition, JOURNAL OF THE JAPAN PETROLEUM INSTITUTE, 59(4), 149-154, 2016
  54. Decomposition Kinetics of Mannose, Its Sugar Alcohol, and Its Uronic Acid under Hydrothermal Condition, JOURNAL OF CHEMICAL ENGINEERING OF JAPAN, 49(7), 663-667, 2016
  55. Effect of Salinity on Methanogenic Propionate Degradation by Acclimated Marine Sediment-Derived Culture, APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 177(7), 1541-1552, 201512
  56. Identification of the mcpA and mcpM Genes, Encoding Methyl-Accepting Proteins Involved in Amino Acid and L-Malate Chemotaxis, and Involvement of McpM-Mediated Chemotaxis in Plant Infection by Ralstonia pseudosolanacearum (Formerly Ralstonia solanacearum P, Applied and Environmental Microbiology, 81(21), 7420-7430, 201511
  57. Efficient aspartic acid production by a psychrophile-based simple biocatalyst, Journal of Industrial Microbiology & Biotechnology, 42(10), 1319-1324, 201510
  58. Dysgonomonas alginatilytica sp nov., an alginate-degrading bacterium isolated from a microbial consortium, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 65, 3570-3575, 201510
  59. Improved methane production from brown algae under high salinity by fed-batch acclimation, Bioresource Technology, 187, 275-281, 201507
  60. Determination of Mannitol Decomposition Rate under Hydrothermal Pretreatment Condition, Journal of the Japan Petroleum Institute, 58(4), 252-255, 201507
  61. Efficient aspartic acid production by a psychrophile-based simple biocatalyst, JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, 42(10), 1319-1324, 2015
  62. Identification of Pseudomonas fluorescens Chemotaxis Sensory Proteins for Malate, Succinate, and Fumarate, and Their Involvement in Root Colonization, Microbes and Environments, 29(4), 413-419, 20141220
  63. Production of 16.5% v/v ethanol from seagrass seeds, Journal of Bioscience and Bioengineering, 118(6), 646-650, 20141220
  64. ★, Evaluation of marine sediments as microbial sources for methane production from brown algae under high salinity, Bioresource Technology, 169, 362-366, 20141020
  65. Supercritical gasification of ethanol fermentation residue of seaweed: effect of sodium chloride salt, International Journal of Nano and Biomaterials, 5(1), 3-13, 20140601
  66. Behavior of Organics in Kelp during Hydrothermal Pretreatment: Fundamental Characteristics and Effect of Salt, Journal of The Fuel Society of Japan, 93(5), 531-535, 20140520
  67. Enhancement of methane production from co-digestion of chicken manure with agricultural wastes, Bioresource Technology, 159, 80-87, 20140520
  68. Enhancement of (R)-1,3-butanediol production by engineered Escherichia coli using a bioreactor system with strict regulation of overall oxygen transfer coefficient and pH, Bioscience Biotechnology and Biochemistry, 78(4), 695-700, 20140420
  69. Degradation of chloroanilines by toluene dioxygenase from Pseudomonas putida T57, Journal of Bioscience and Bioengineering, 117(3), 292-297, 20140320
  70. Genome-guided analysis of transformation efficiency and carbon dioxide assimilation by Moorella thermoacetica Y72, Gene, 535(2), 150-155, 20140220
  71. Value-added lipid production from brown seaweed biomass by two-stage fermentation using acetic acid bacterium and thraustochytrid, Applied Microbiology and Biotechnology, 98, 9207-9216, 2014
  72. Engineering of a functional thermostable kanamycin resistance marker for use in Moorella thermoacetica ATCC39073, Fems Microbiology Letters, 343(1), 8-12, 20131020
  73. ★, Development of genetic transformation and heterologous expression system in carboxydotrophic thermophilic acetogen Moorella thermoacetica, Journal of Bioscience and Bioengineering, 115(4), 347-352, 20130420
  74. Improvement of (R)-1,3-butanediol production by engineered Escherichia coli, Journal of Bioscience and Bioengineering, 115(5), 475-480, 20130320
  75. Isolation of Thermophilic Acetogens and Transformation of Them with the pyrF and kan(r) Genes, Bioscience Biotechnology and Biochemistry, 77(2), 301-306, 20130220
  76. Construction of a simple biocatalyst using psychrophilic bacterial cells and its application for efficient 3-hydroxypropionaldehyde production from glycerol, AMB Express, 3, 2013
  77. Identification of Chemotaxis Sensory Proteins for Amino Acids in Pseudomonas fluorescens Pf0-1 and Their Involvement in Chemotaxis to Tomato Root Exudate and Root Colonization, Microbes and Environments, 27(4), 462-469, 20121220
  78. Evaluation of anaerobic biodegradability of forage rice straw fertilized with livestock waste, Water Science and Technology, 66(2), 438-444, 20121220
  79. Ethanol production from brown algae with alginate-degrading microbial consortia, Proceedings of 19th Regional Symposium of Chemical Engineering, -(-), A-02-1-4, 20121120
  80. Isolation and characterization of tetrahydrofuran-degrading Rhodococcus aetherivorans strain M8, Process Biochemistry, 47(11), 1665-1669, 20121120
  81. Understanding of microbial diversity required for efficient methane production from marine biomass resources, Proceedings of The 9th Asia-Pacific Marine Biotechnology Conference, -(-), 14S1-2, 20120620
  82. Pathway of 17 beta-estradiol degradation by Nitrosomonas europaea and reduction in 17 beta-estradiol-derived estrogenic activity, Environmental Chemistry Letters, 9(1), 1-6, 20110320
  83. Thermophilic two-stage dry anaerobic digestion of model garbage with ammonia stripping, Journal of Bioscience and Bioengineering, 111(3), 312-319, 20110320
  84. Brewer's yeast cell wall affects microbiota composition and decreases Bacteroides fragilis populations in an anaerobic gut intestinal model, Journal of Bioscience and Bioengineering, 111(2), 178-184, 20110220
  85. Direct and Indirect Greenhouse Gas Emissions from Vertical Flow Constructed Wetland Planted with Forage Rice, Kagaku Kogaku Ronbunshu, 36(4), 229-236, 20101220
  86. ★, Improved methane fermentation of chicken manure via ammonia removal by biogas recycle, Bioresource Technology, 101(16), 6368-6373, 20100820
  87. Dry anaerobic ammonia-methane production from chicken manure, Applied Microbiology and Biotechnology, 82(4), 757-764, 20090320
  88. Dry mesophilic fermentation of chicken manure for production of methane by repeated batch culture, Journal of Bioscience and Bioengineering, 107(3), 293-295, 20090320
  89. Nitrogen transformations in vertical flow systems with and without rice (Oryza sativa) studied with a high-resolution soil-water profiler, Ecological Engineering, 35(2), 213-220, 20090220
  90. Ammonia-methane two-stage anaerobic digestion of dehydrated waste-activated sludge, Applied Microbiology and Biotechnology, 79(6), 1061-1069, 20080720
  91. Degradation of glyoxylate and glycolate with ATP synthesis by a thermophilic anaerobic bacterium, Moorella sp strain HUC22-1, Applied and Environmental Microbiology, 74(5), 1447-1452, 20080320
  92. Characterization of enzymes involved in the ethanol production of Moorella sp HUC22-1, Archives of Microbiology, 188(1), 37-45, 20070720
  93. Recent development of anaerobic digestion processes for energy recovery from wastes, Journal of Bioscience and Bioengineering, 103(2), 105-112, 20070220
  94. Desulfotomaculum carboxydivorans sp. nov., a novel sulfate-reducing bacterium capable of growth at 100 % CO, International Journal of Systematic and Evolutionary Microbiology, 55(5), 2159-2165, 20050920
  95. H2 and ethanol production from glycerol-containing wastes discharged from biodiesel manufacturing process., Journal of Bioscience and Bioengineering, 100(3), 260-265, 20050920
  96. ★, Hydrogen and ethanol production from glycerol-containing wastes discharged after biodiesel manufacturing process, Journal of Bioscience and Bioengineering, 100(3), 260-265, 20050920
  97. Isolation of higher astaxanthin producing mutants of Phaffia rhodozyma by cell sorting monitoring elevated cellular redox potentials upon heat shock treatment, The 14th International Symposium On Carotenoids (Iupac) Edinburgh, Uk, 2005, 75, 20050720
  98. Acetate and ethanol production from H-2 and CO2 by Moorella sp using a repeated batch culture, Journal of Bioscience and Bioengineering, 99(3), 252-258, 20050320
  99. Ethanol production from H2 and CO2 by a newly isolated thermophilic bacterium, Moorella sp HUC22-1, Biotechnology Letters, 26(20), 1607-1612, 20041020
  100. High-yield production of hydrogen by Enterobacter aerogenes mutants with decreased alpha-acetolactate synthase activity, Journal of Bioscience and Bioengineering, 97(4), 227-232, 20040420
  101. Metabolic analysis of acetate accumulation, during xylose consumption by Paenibacillus polymyxa, Applied Microbiology and Biotechnology, 64(1), 112-119, 20040320
  102. High rate production of hydrogen/methane from various substrates and wastes, Recent Progress of Biochemical and Biomedical Engineering In Japan I, 90, 63-87, 20040120
  103. Heterologous Protein Expression in a Halophilic Green Alga Dunaliella bardawil, 6th International Marine Biotechnology Conference/5th Asia-Pacific Marine Biotechnology Conference, 2003, 20030920
  104. Hydrogen production of Enterobacter aerogenes altered by extracellular and intracellular redox states, International Journal of Hydrogen Energy, 27(11-12), 1399-1405, 20021220
  105. H2 production of Enterobacter aerogenes altered by extracellular and intracellular redox states, International Journal of Hydrogen Energy, 27(11/12), 1399-1405, 20021120
  106. Alternative transformation method for a unicellular green alga Chlamydomonas reinharditii by polyamidoamine dendrimers, Proceedings of 9th International Symposium On The Genetics of Industrial Microorganisms, 137, 20020420
  107. Genetic transformation of reporter genes for astaxanthin-producing unicellular green alga Haematococcus pluvialis by electropolation., 9th International Symposium On The Genetics of Industrial Microorganisms, Gyeongju, Korea, 137, 20020420
  108. Hydrogen-methane two-stage process for anaerobic wastewater treatment, Proceedings of International Conference On Tropical Bio-Resources and Green Chemistry Strategy, 326-331, 20020420
  109. Biological and chemical treatment of solid waste from soy sauce manufacture, Water Science and Technology, 45(12), 335-338, 20020120
  110. Enhancement of (R,R)-2,3-butanediol production from xylose by Paenibacillus polymyxa at elevated temperatures, Biotechnology Letters, 24(2), 109-114, 20020120
  111. Bio-Hydrogen Production, Jsps Biotechnology Joint Seminar Proceedings, 20011220
  112. Methane fermentation of coastal mud sediment by a two-stage upflow anaerobic sludge blanket (UASB) reactor system, Applied Microbiology and Biotechnology, 56(1-2), 280-285, 20010720
  113. Asymmetric reduction of ethyl acetoacetate to ethyl (R)-3-hydroxybutyrate coupled with nitrate reduction by Paracoccus denitrificans., Journal of Bioscience and Bioengineering, 91(4), 368-372, 20010420
  114. Efficient production of cellulolytic and xylanolytic enzymes by the rumen anaerobic fungus, Neocallimastix frontalis, in a repeated batch culture, Journal of Bioscience and Bioengineering, 91(2), 153-158, 20010220
  115. Enhanced 2,3-butanediol production by addition of acetic acid in Paenibacillus polymyxa, Journal of Bioscience and Bioengineering, 90(6), 661-664, 20001220
  116. Development of denitrification system using immobilized chemoautotrophic bacterium, Thiobacillus denitrificans., The Proceedings of Fifth International Symposium On Environmental Biotechnology, P1-11, 20000720
  117. Methane fermentation of cellulose powder, sea sediment mud and soybean solid waste., The Proceedings of Fifth International Symposium On Environmental Biotechnology, O6-3, 20000720
  118. Methane fermentation of coastal mud sediment., The Proceedings of Fifth International Symposium On Environmental Biotechnology, P5-5, 20000720
  119. Degradation of Excess Activated Sludge by Thermophilic Bacteria, International Symposium of Environmental Biotechnology, 182, 20000420
  120. Genetic transformation of a halophilic green alga Dunaliella bardawil with some reporter genes, The 4th Asia-Pacific Conference On Algal Biotechnology, Hong Kong Convention and Exhibition Centre, 86, 20000420
  121. Direct conversion of cellulose to methane by anaerobic fungus Neocallimastix frontalis and defined methanogens, Biotechnology Letters, 22(3), 223-227, 20000220
  122. Methane production from cellulose by co-culture of anaerobic fungus Neocallimastix frontalis and methanogens., Proceeding of Asia-Pacific Biochemical Engineering Conference ’97, Beijing, RPC, P-ENV19, 19991119
  123. Flocculating Property of Extracellular Polymeric Substance Derived from a Marine Photosynthetic Bacterium, Rhodovulum sp., Journal of Bioscience and Bioengineering, 87(5), 625-629, 19990519
  124. Massive astaxanthin production by a green alga Haematococcus pluvialis NIES-144 in acetate-feeding photobioreactor., The Second Asian Pacific Phycological Forum, The Chinese University of Hong Kong (1999), 19990419
  125. Removal of organic matters from wastewater using photostnthetic bacterial flocs or artificial UASB granules, Biotechnology For Sustainable Utilization of Biological Resources In The Tropics, 13, 115-122, 19990419
  126. Inhibitory effect of acetic acid on growth of hyperthermophilic archaeon pyrococcus furiosus., Journal of Bioscience and Bioengineering, 87(2), 149-154, 19990219
  127. Growth and flocculation of a marine photosynthetic bacterium Rhodovulum sp., Appl. Microbiol. Biotechnol., 50(6), 682-691, 19981219
  128. High density cell culture of a marine photosynthetic bacterium Rhodovulum sp. with self-flocculated cells., Biotechnology Letters, 20(12), 1113-1117, 19981219
  129. Optimization of dilution rate, pH and oxygen supply on optical purity of 2, 3-butanediol produced by Paenibacillus polymyxa in chemostat culture., Biotechnology Letters, 20(12), 1133-1138, 19981219
  130. Promotion of growth and flocculation of a marine photosynthetic bacterium, Rhodovulum sp. by metal cations., Biotechnology Letters, 20(12), 1109-1112, 19981219
  131. Hydrogen production with high yield and high evolution rate by self-flocculated cells of Enterobacter aerogenes in a packed-bed reactor., Applied Microbiology and Biotechnology, 49(4), 450-454, 19980419
  132. Kinetics and energetics of Acetobacterium sp. in chemostat culture on methanol-CO2, Journal of Fermentation and Bioengineering, 85(2), 223-229, 19980219
  133. Astaxanthin production by Phaffia rhodozyma enhanced in fed-batch culture with glucose and ethanol feeding., Biotechnology Letters, 19(11), 1109-1111, 19971119
  134. Influence of oxygen and glucose on primary metabolism and astaxanthin production by Phaffia rhodozyma in batch and fed-batch cultures: kinetic and stoichiomeric analysis, Appl. Environ. Microbiol., 63(11), 4471-4478, 19971119
  135. pH Auxostat continuous culture of Acetobacterium sp. coupled with removal of acetate by Methanosaeta concilli, Biotechnol. Lett., 19(10), 989-993, 19971019
  136. Hydrogen production with high yield and high growth rate by Enterobacter aerogenes., 1323-1326, 19971019
  137. Enhanced hydrogen production in altered mixed acid fermentation of glucose by Enterobacter aerogenes, J. Ferment. Bioeng., 83, 358-363, 19970419
  138. Efficient Regeneration from GUS-Transformed Ajuga Hairy Root, Journal of Fermentation and Bioengineering, 81(5), 374-378, 19960519
  139. Efficient Culture Method for Production of Plantlets from Mechanically Cut Horseradish Hairy Roots., Journal of Fermentation and Bioengineering, 81(1), 87-89, 19960119
  140. Production of plantlets for use as Artificial Seeds from Horseradish Hairy Roots Fragmented in a Blender., Journal of Fermentation and Bioengineering, 79(5), 458-464, 19950519
  141. Stimulation of Emergence of Root Apical Meristems in Horseradish Hairy Root by Auxin Supplementation and Its Kinetic Model., Journal of Fermentation and Bioengineering, 77(2), 178-182, 19940219
  142. Comparison of acetate inhibition on growth of host and recombinant E. coli K12 strains., Biotechnology Letters, 14(12), 1115-1118, 19921219
  143. Production of artificial seed from horseradish hairy root., Journal of Fermentation and Bioengineering, 74(1), 21-26, 19920719
  144. Excretion of Peroxidase from horseradish hairy root in combination with ion supplementation., Applied Microbiology and Biotechnology, 37(5), 560-565, 19920519

Publications such as books

  1. 2017/01, Applied Bioengineering- Innovations and Future Directions (Edited by Toshiomi Yoshida), Energy Recovery from Organic Waste, John Wiley & Sons, 2017, 2017, Scholarly Book, Joint work, English, Yutaka Nakashimada, Naomichi Nishio, 978-3-527-34075-0, 656, 545-573
  2. 2015/04, Membrane Reactors for Energy Applications and Basic Chemical Production, Membrane reactors for biogas production and processing, 2015, 04, Scholarly Book, Joint work, Manabu Miyamoto, Shigeyuki Uemiya, Yutaka Nakashimada, 9781782422273, 696, 345-366
  3. 2014/03, Microbial Production-From Genome Design to Cell Engineering , Production of biofuels and useful materials by anaerobic organisms in ecosystem of methane fermentation, 2014, 03, Scholarly Book, Joint work, Y. Nakashimada, N. Nishio, 9784431546061, 306, 283-300
  4. 2013/02, Food Industry Wastes  1st Edition - Assessment and Recuperation of Commodities, Hydrogen generation from food industry and biodiesel wastes, Manufacture of biogas and fertilizer from solid food wastes by means of anaerobic digestion, 2013, 02, Scholarly Book, Joint work, Y. Nakashimada, N. Nishio, 9780123919212, 338, 121-133, 157-170
  5. 2015/01, Handbook of Marine Biotechnology, Biofuel innovation by microbial diversity, 2013, 02, Scholarly Book, Joint work, Thiago Bruce, Astria D. Ferrao-Gonzales, Yutaka Nakashimada, Yuta Matsumura, Fabiano Thompson, Tomoo Sawabe, 9783642539701, 1512, 1163-1180
  6. 2004/06, High rate production of hydrogen/methane from various substrates and wastes. , Advanced in Biochemical Engineering/Biotechnology, 2004, 06, Scholarly Book, Cocompilation, Y. Nakashimada, N. Nishio, 24

Invited Lecture, Oral Presentation, Poster Presentation

  1. Carbon recycling fermentation processes using biomass, syngas and CO2, Yutaka Nakashimada, The 10th China-Japan Symposium on Chemical engineering, 2021/11/29, With Invitation, English, The Chemical Industry and Engineering Society of China (CIESC), The Society of Chemical Engineers, Japan (SCEJ), On-line
  2. Anaerobic fermentation technology to recover energy and chemicals from various biomass including agricultural wastes, Yutaka Nakashimada, The 2nd INTERNATIONAL CONFERENCE ON SUSTAINABLE PLANTATION, 2021/08/02, With Invitation, English, Indonesian Agency for Agricultural Research and Development, On-line
  3. Future perspective of Biomass toward Sustainable Society, Yutaka Nakashimada, International Workshop on Biomass for Biofuels 2017, 2017/10/19, With Invitation, English, Research Center for Chemistry, Indonesian Institute of Science and Indonesian Research Institute for Biotechnology and Bioindustry, Serpong, Indonesia
  4. Integrated process development for biorefinery of seaweed, Y. Nakashimada, T. Aki, Y. Okamura, Y. Matsumura, N. Nakamura, The 11th Asia-Pacific Marine Biotechnology Conference 2017, 2017/05/24, With Invitation, English, The Asia Pacific Society of Marine Biotechnology, Hawaii, USA
  5. Anaerobic digestion of land and marine biomass, Yutaka Nakashimada, Seminar in Shanghai Acadamy of Agriculture Science, 2016/12/02, With Invitation, English, Shanghai Acadamy of Agriculture Science
  6. Fermentation technology to recover energy and high-value added products from seaweed, Yutaka Nakashimada, 4th International Conference on Bioprocess and Biosystem Engineering, 2016/10/21, With Invitation, English, Conference Series LLC, Houston, USA
  7. Process development of anaerobic digestion for energy and material production from land and marine biomass, Yutaka Nakashimada, The Society for Biotechnology, Japan/Annual Meeting 2015, 2015/10/27, With Invitation, Japanese, The Society for Biotechnology, Japan, Kagoshima, Japan
  8. Anaerobic fermentation of unconventional substrates for recovery of energy and useful materials, Y. Nakashimada, N. Nishio, Asia BioHydrogen & BioEnergy 2013, 2013/12/24, With Invitation, English, Asia Biohylinks, Osaka City University
  9. Biomass refinery via biological gasification and conversion of various feedstocks, Y. Nakashimada, 2nd Joint Conference in Renewable Energy and Nanotechnology (JCREN2013), 2013/11/25, With Invitation, English, Higashi-Hiroshima, Japan.
  10. Production of biofuels and useful materials by anaerobic organisms, Y. Nakashimada, Japanese and Chinese Scholars Symposium on Low-Carbon and Biomass Conversion, 2013/11/04, With Invitation, English, Huaian City, China
  11. Understanding of microbial diversity required for efficient methane production from marine biomass resources, Y. Nakashimada, N. Nishio, The 9th Asia-Pacific Marine Biotechnology Conference, 2012/07/15, With Invitation, English, Kochi, Japan