SO FUJIYOSHI

Last Updated :2024/06/05

Affiliations, Positions
The IDEC Insitute; PHIS, Assistant Professor
Web Site
E-mail
sofu62hiroshima-u.ac.jp
Self-introduction
My research topic is microbial ecology especially, biotic-abiotic, biotic-biotic interaction. I am engaged in research by combining field (want to visit various place), wet (experiment in lab), and dry (bioinformatics).

Basic Information

Major Professional Backgrounds

  • 2017/04/01, 2018/03/31, Kyoto University, Graduate school of Medicine, Assistant professor
  • 2018/04/01, 2020/03/31, Kyoto University, Graduate school of human and environmental studies, Assistant professor
  • 2020/04/01, 2022/03/31, Hiroshima University, Office of Academic Research and Academia-Government Collaboration, Assistant professor
  • 2018/04, 2023/03, JST/JICA SATREPS, JICA expert

Educational Backgrounds

  • Hokkaido Universiy, School of Fisheries Sciences, Aquaculture Life Science, Japan, 2008/04, 2012/03
  • Hokkaido University, Graduate School of Fisheries Sciences, Marine life science, Japan, 2012, 2014
  • Kyoto University, Graduate school of Agriculture, Division of applied biosciences, Japan, 2014/04, 2017/03

Academic Degrees

  • HOKKAIDO UNIVERSITY
  • Kyoto University

Research Fields

  • Agricultural sciences;Applied aquatic science;Aquatic life science
  • Biological Sciences;Genome science;Medical genome science
  • Medicine,dentistry, and pharmacy;Society medicine;Hygiene and public health
  • Environmental science;Environmental analyses and evaluation;Environmental impact assessment

Research Keywords

  • interaction
  • NGS
  • microbial community
  • genome microbiology
  • metagenome
  • microbial ecology
  • microbiology

Affiliated Academic Societies

  • Japanese society of Microbial Ecology
  • Society of Indoor Environment
  • Society of Genomie Microbiology

Educational Activity

Course in Charge

  1. 2024, Liberal Arts Education Program1, 4Term, Food and Life Science
  2. 2024, Undergraduate Education, 4Term, Genomic Medicine
  3. 2024, Graduate Education (Doctoral Program) , First Semester, Advanced Seminar on Microbial Genomics and Ecology
  4. 2024, Graduate Education (Doctoral Program) , Second Semester, Advanced Seminar on Microbial Genomics and Ecology
  5. 2024, Graduate Education (Doctoral Program) , First Semester, Advanced Research on Microbial Genomics and Ecology
  6. 2024, Graduate Education (Doctoral Program) , Second Semester, Advanced Research on Microbial Genomics and Ecology
  7. 2024, Graduate Education (Master's Program) , Intensive, Introduction and Topics in Environmental Genomics and Ecology

Research Activities

Academic Papers

  1. Monitoring bacterial composition and assemblage in the Gulf of Corcovado, southern Chile: Bacteria associated with harmful algae, Current Research in Microbial Sciences, 4, 2023
  2. Perspectives on Sampling and New Generation Sequencing Methods for Low-Biomass Bioaerosols in Atmospheric Environments, J Indian Inst Sci, 20230512
  3. The holobiome of marine harmful algal blooms (HABs): A novel ecosystem-based approach for implementing predictive capabilities and managing decisions, Environmental Science & Policy, 143, 44-54, 202305
  4. Learning from mistakes: challenges in finding holobiont factors from environmental samples and the importance of methodological consistency, CURRENT OPINION IN BIOTECHNOLOGY, 80, 202304
  5. Zooplankton act as cruise ships promoting the survival and pathogenicity of pathogenic bacteria, MICROBIOLOGY AND IMMUNOLOGY, 66(12), 564-578, 202212
  6. Understanding effects of ventilation on airborne microorganisms in build environments: A perspective, CLIMA 2022 Conference, 20220506
  7. Fabrication of a new all-in-one microfluidic dielectrophoresis integrated chip and living cell separation, iScience, 25(2), 103776, 20220218
  8. Characteristics of PM2.5 Pollution in Osorno, Chile: Ion Chromatography and Meteorological Data Analyses, Atmosphere, 13(2), 168, 20220117
  9. A Standardized Procedure for Monitoring Harmful Algal Blooms in Chile by Metabarcoding Analysis, JoVE, 20210826
  10. Structure of bacterial communities in Japanese-style bathrooms: Comparative sequencing of bacteria in shower water and showerhead biofilms using a portable nanopore sequencer, bioRxiv., 20210714
  11. 16S rRNA–Based Analysis Reveals Differences in the Bacterial Community Present in Tissues of Choromytilus chorus (Mytilidae, Bivalvia) Grown in an Estuary and a Bay in Southern Chile, Diversity, 13(5), 209, 20210512
  12. Thermal destabilization mechanism of cytochrome c' from psychrophilic Shewanella violacea, Bioscience, Biotechnology, and Biochemistry, zbab007, 20210116
  13. Airborne bacterial communities of outdoor environments and their associated influencing factors, Environment International, 145, 106156, 20201201
  14. Suitcase Lab: new, portable, and deployable equipment for rapid detection of specific harmful algae in Chilean coastal waters, Environmental Science and Pollution Research, 1-12, 20201118
  15. 16S and 18S Metabarcoding analysis for Chilean coastal waters harmful algal blooms, protocols.io, 20201023
  16. Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile, International Journal of Enviromental Research and Public Health, 17(20), 7642, 20201020
  17. Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer, Scientific Reports, 10(1), 12580, 20200728
  18. Size resolved characteristics of urban and suburban bacterial bioaerosols in Japan as assessed by 16S rRNA amplicon sequencing, Scientific Reports , 10(1), 12406, 20200722
  19. Airborne microbial communities at high-altitude and suburban sites in Toyama, Japan suggest a new perspective for bioprospecting, Frontiers in Bioengineering and Biotechnology, 7, 12, 20190205
  20. Transmission of airborne bacteria across built environments and its measurement standards: a review, Frontiers in Microbiology, 8, 2336, 20171129
  21. Effects of hemagglutination activity in the serum of a deep-sea vent endemic crab, Shinkaia Crosnieri, on non-symbiotic and symbiotic bacteria, Microbes and Environments, 30(3), 228-234, 20150725
  22. Airborne bacterial community associated with fine particulate matter (PM2.5) under different air quality indices in Temuco city, southern Chile, ARCHIVES OF MICROBIOLOGY, 204(2), 202202
  23. Relationship between the Microbiome and Indoor Temperature/Humidity in a Traditional Japanese House with a Thatched Roof in Kyoto, Japan, Diversity, 13(10), 202110
  24. Label-Free Separation of Living Bacteria and Eukaryotic Cells by a Novel Microfluidic Dielectrophoresis Integrated Chip System, SSRN, 202108
  25. Spatiotemporal Dynamics of Hologenome in Oral Polymicrobial Disease, The Medical Frontline, 73(4), 509-522, 201804
  26. Holobiome : interplay between microbe and host, SEITAI NO KAGAKU, 68(2), 97-101, 201703
  27. Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont, The ISME Journal, 8(1), 40-51, 201401

Invited Lecture, Oral Presentation, Poster Presentation

  1. Microbial Communities in Traditional Homes: Implications for Human Health and Well-Being, The 36th Japan Society for Microbial Ecology& The 13th Asian Symposium on Microbial Ecology, 2023/11/28, With Invitation, Hamamatsu
  2. An approach to forecast harmful algal blooms in Chile using empirical dynamic modelling, Ishara Uhanie Perera, So Fujiyoshi, Daiki Kumakura, Shinji Nakaoka, Fumito Maruyama, 35th JSME,Sapporo, 2022/11/03, Without Invitation, English, Japanese Society of Microbial Ecology, SAPPORO CONVENTION CENTER
  3. Structure of bacterial communities in Japanese-style bathrooms: Comparative sequencing of bacteria in shower water and showerhead biofilms using a portable nanopore sequencer, Fumito Maruyama, So Fujiyoshi, Yukiko Nishiuchi, Colorado Mycobacteria Conference 2022: Focus on NTM, 2022/06/01, Without Invitation, English, Colorado State University, Fort Collins, CO, USA
  4. Understanding effects of ventilation on airborne microorganisms in build environments: A perspective, So Fujiyoshi, Mateja Dovjak, Janja Vaupotič, Fumito Maruyama, CLIMA 2022 the 14th HVAC World Congress, 2022/05/25, Without Invitation, English, Rotterdam, The Netherlands
  5. Potential use of a novel all-in-one microfluidic dielectrophoresis integrated chip for cell living separation in aquatic microbiology research, Jacquelinne J. Acuña, Milko A. Jorquera, Joaquin-Ignacio Rilling, Marco Campos, Tay Ruiz, Andrés Ávila, Mariela Gonzalez, Henry Cameron, Carlos Riquelme, Karen Vergara, Gonzalo Gajardo, Jonnathan Vilugrón, Gonzalo Fuenzalida, Oscar Espinoza-González, Leonardo Guzmán, Kyoko Yarimizu, So Fujiyoshi, Fumito Maruyama, XLI Marine Science Congress 2022, 2022/05/24, Without Invitation, English, Concepción, Chile
  6. Lessons from bioaerosol analysis in Japan and ongoing projects, Fujiyoshi S, Aerobiology Seminar, 2021/12/15, With Invitation, English, Temuco, Chile
  7. Harmful Algae Monitoring on San Jorge Bay in Antofagasta, Chile, Kyoko Yarimizu, Carlos Riquelme, Henry Cameron, Vladimir Ávalos, Stephanie Barría, So Fujiyoshi, Ignacio Rilling, Emma Cascales, Jonnathan Vilugrón, Oscar Espinoza, Leonardo Guzmán, Milko A. Jorquera, Satoshi Nagai, Fumito Maruyama, 19th International Conference on Harmful Algae (ICHA), 2021/10/12, Without Invitation, English
  8. Microbiome and indoor temperature/humidity in a traditional Japanese house with a thatched roof, Maruyama F, Fujiyoshi S, Kokubo M, Nakajima M, Ogura D, ASM Microbe, 2021/06/10, Without Invitation, English, Washington DC, USA
  9. Water supply provides bacteria for the shower head, but the environment selects, Fujiyoshi So, Maruyama Fumito, World Microbe Forum, 2021/06/00, Without Invitation, English, Online
  10. Environmental hologenome research by hybrid approach, So Fujiyoshi, The 15th Annual Meeting of Society of Genome Microbiology, Japan, 2021/03/05, With Invitation, Japanese
  11. Characteristics of the microbial community in bioaerosol in Chile and Japan, Fujiyoshi S, XVII Coloquios de Microbiología, 2020/07/30, With Invitation, English, Online
  12. Characteristics of the microbial community in bioaerosol in Chile and Japan, Fujiyoshi S, XVII Coloquios de Microbiología, 2020/07/30, With Invitation, English, Valparaiso, Chile(On-line)
  13. The locality of airborne microbial community, Fujiyoshi S, Bioaerosol Meeting, 2020/01/08, With Invitation, English, Universidad de Magallanes, Punta Arenas, Chile
  14. Suitcase lab: A new portable and deployable equipment for a rapid detection of specific harmful algae in Chilean coastal waters, Fujiyoshi S, Maruyama F, 7th International Workshop: Advances in Science and Technology of Bioresource, 2019/12/02, With Invitation, English, Pucon, Chile
  15. Bioinformatics in microbiome analysis, Fujiyoshi S, El 1o Workshop Konün Wenü 2019, 2019/09/26, With Invitation, English, Centro de Excelencia de Modelación y Computación Científica (CMCC), Universidad de La Frontera, Temuco, Chile
  16. Diferencia específica en la composición bacteriana entre el biofilm de la ducha y el agua de la ducha en el baño japonés, So Fujiyoshi, Fumito Maruyama, 2019/09/11, Without Invitation, Spanish, Chile
  17. Bacterial bioaerosols at Yokohama and Toyama in Japan, Fumito Maruyama, So Fujiyoshi, Daisuke Tanaka, 1st. ISME-LATIN AMERICA CONGRESS Technical University Federico Santa Maria Valparaiso, 2019/09/11, English, Chile
  18. Specific difference in bacterial composition between shower-head biofilm and shower water in Japanese bathroom, So Fujiyoshi, Fumito Maruyama, 1st. ISME-LATIN AMERICA CONGRESS Technical University Federico Santa Maria Valparaiso, 2019/09/11, With Invitation, English, Chile
  19. SATREPS progress update, Fujiyoshi S, 2019/09/09, With Invitation, English, Taller Actividades SATREPS y otros proyectos en Magallanes, Punta Arenas, Chile
  20. Bacterial community analysis by metagenomic approaches, Fujiyoshi S, Bioinformatics meeting, Centro Austral de technologia genómica, 2018/12/12, With Invitation, English, Universidad de Magallanes, Punta Arenas, Chile
  21. Bacterial community analysis by metagenomic approaches, Fujiyoshi S, 2018/11/26, With Invitation, English, Universidad Tecnica Federico Santa Maria, Viña del mar, Chile
  22. Bacterial community analysis by metagenomic approaches, Fujiyoshi S, Lecture in Lembaga llmu Pengetahuan Indonesia (LIPI), 2018/10/22, With Invitation, English, Jakarta, Indonesia
  23. Bacterial community analysis by metagenomic approaches, Fujiyoshi S, Seminar in the laboratory of technological research in pattern recognitions (LITRP), 2018/08/31, With Invitation, English, Scientific-Technological Park, Catholic University of Maule, Talca, Chile
  24. Metagenomic techniques applied to monitor algal holobiome, Fujiyoshi S, Lecture in Facultad de Ciencias, 2018/08/07, With Invitation, English, Universidad de Chile, Santiago, Chile
  25. Metagenomic techniques applied to monitor algal holobiome, Fujiyoshi S, Lecture in Centro de investigación Oceanografica (COPAS) Sur-Austra, 2018/08/06, With Invitation, English, Universidad de Concepción, Concepción, Chile
  26. Identification of biomarkers by metagenomic analysis ~toward on-site monitoring of holobiome dynamics, Fujiyoshi S, Conocimiento y Naturaleza, Special Invitation seminar, 2018/08/02, With Invitation, English, Instituto de Bioquimeica y Mivrobiología, Universidad Austral de Chile, Valdivia, Chile
  27. Bacteria living in Japanese bathroom, Fujiyoshi S, Planetary Protection Center of Excellence: Capabilities for ISS Research, 2018/07/26, With Invitation, English, NASA, Los Angeles, USA
  28. Metagenomic analysis revealed biomarkers of specific pathogen, Fujiyoshi S, A Special Summer Presentation, 2018/07/24, With Invitation, English, Minnesota University, Minnesota, USA
  29. Connect to microorganisms whenever, wherever, Fujiyoshi S, Microbiology and Immunology, Special Seminar, 2018/07/23, With Invitation, English, Minnesota University, Minnesota, USA
  30. Bacterial 16S rRNA gene profiling by portable DNA sequencer from shower water, shower head, bathtub inlet in Japan, So Fujiyoshi, Ai Muto, Fumito Maruyama, Microbiology of the Built Environment, Gordon Research Conference, 2018/07/15, Without Invitation, English, ME, United States
  31. Bathroom Microbiome as a source of bioaerosol in indoor environment, So Fujiyoshi, Fumito Maruyama, 11th Bioaerosol symposium, 2018/02/00, Without Invitation, Japanese, Nagano, Japan
  32. Evaluation of sanitary microbiological health of indoor environment based on NTM, So Fujiyoshi, Fumito Maruyama, Research group on genetic ecology of NTM, 2017/08/00, Without Invitation, Japanese, Kyoto, Japan
  33. Unique morphological features of deep-sea endemic crab ventral setae, Fujiyoshi S, Watsuji T, Sawayama S and Nakagawa S, 5th International workshop on deep-sea microbiology, 2016/09/10, With Invitation, English, Kyoto, Japan
  34. Purification and characterization of serum lectin from a deep-sea hydrothermal vent invertebrate, Fujiyoshi S, Arai T, Mino S, Watsuji T, Sawabe T and Nakagawa S, 2013, Without Invitation, English

Awards

  1. 2021/04/15, FEMS Congress attendance grants, World Microbe Forum, Water supply provides bacteria for the shower head, but the environment selects