Tomonori Kindaichi
Last Updated :2024/09/10
- Affiliations, Positions
- Graduate School of Advanced Science and Engineering, Professor
- Web Site
- E-mail
- tomokinhiroshima-u.ac.jp
- Self-introduction
- My research interests are discovery and enrichment of microorganisms that are useful for water treatment. In particular, I am focusing on (anaerobic ammonium oxidation) anammox bacteria that can efficiently remove ammonia in wastewater. Currently, our laboratory has three enrichment cultures of different species of anammox bacteria. Taking advantage of the different characteristics of each species, I am considering to apply it not only to the field of wastewater treatment but also to livestock wastewater and aquaculture wastewater.
Basic Information
Major Professional Backgrounds
- 2023/10/01, Hiroshima University, Graduate School of Advanced Science and Engineering, Professor
- 2020/04/01, 2023/09/30, Hiroshima University, Graduate School of Advanced Science and Engineering, Associate Professor
- 2010/08/01, 2011/03/22, Aalborg University, Department of Biotechnology, Chemistry and Environmental Engineering, Visiting Researcher
- 2007/04/01, 2020/03/31, Hiroshima University, Graduate School of Engineering, Assistant Professor
- 2004/04/01, 2007/03/31, Hiroshima University, Graduate School of engineering, Research Associate
Educational Backgrounds
- Hokkaido University, Graduate School, Division of Engineering, Urban and Environmental Engineering, Japan, 2001/04, 2004/03
- Toyohashi University of Technology, Graduate School, Division of Engineering, Architecture and Civil Engineering, Japan, 1999/04, 2001/03
- Toyohashi University of Technology, Faculty of Engineering, Japan, 1997/04, 1999/03
- National Institute of Technology, Hakodate Colledge, Department of Civil Engineering, 1992/04, 1997/03
Academic Degrees
- Doctor of Engineering, Hokkaido University
- Master of Engineering, Toyohashi University of Technology
Educational Activity
- [Bachelor Degree Program] School of Engineering : Cluster 4(Civil Engineering and Architecture) : Program of Civil and Environmental Engineering
- [Master's Program] Graduate School of Advanced Science and Engineering : Division of Advanced Science and Engineering : Civil and Environmental Engineering Program
- [Doctoral Program] Graduate School of Advanced Science and Engineering : Division of Advanced Science and Engineering : Civil and Environmental Engineering Program
Research Fields
- Engineering;Civil engineering;Civil and environmental engineering
- Environmental science;Environmental conservation;Environmental engineering and reduction of environmental burden
- Biology;Basic biology;Biodiversity / Systematics
Research Keywords
- wastewater treatment
- environmental microbiology
- anammox
- nitrification
Affiliated Academic Societies
- Japan Society of Civil Engineering, 1996
- Japan Society on Water Environment, 2000
- Japan Society of Microbial Ecology, 2002
- Japan Society of Material Cycles and Waste Management, 2017
- Japan Water Works Association, 2017
- Japan Sewage Works Association, 2021
- International Water Association, 2011
- International Society for Microbial Ecology
Educational Activity
Course in Charge
- 2024, Undergraduate Education, 2Term, Experiments in Civil and Environmental Engineering
- 2024, Undergraduate Education, 2Term, Microbiology and Ecology for Engineering
- 2024, Undergraduate Education, 1Term, Sanitary and environmental engineering and exercise
- 2024, Undergraduate Education, 3Term, Design of Infrastructures
- 2024, Undergraduate Education, 1Term, Introduction of Civil and Environmental Engineering
- 2024, Undergraduate Education, Year, Graduation Thesis
- 2024, Graduate Education (Master's Program) , 1Term, Special Exercises on Civil and Environmental Engineering A
- 2024, Graduate Education (Master's Program) , 2Term, Special Exercises on Civil and Environmental Engineering A
- 2024, Graduate Education (Master's Program) , 3Term, Special Exercises on Civil and Environmental Engineering B
- 2024, Graduate Education (Master's Program) , 4Term, Special Exercises on Civil and Environmental Engineering B
- 2024, Graduate Education (Master's Program) , Academic Year, Special Study on Civil and Environmental Engineering
- 2024, Graduate Education (Master's Program) , 2Term, Advanced Environmental Protection Engineering
- 2024, Graduate Education (Doctoral Program) , Academic Year, Special Study on Civil and Environmental Engineering
Research Activities
Academic Papers
- Analysis of size distribution and areal cell density of ammonia-oxidizing bacterial microcolonies in relation to substrate microprofile in biofilms, Biotechnology and Bioengineering, 85(1), 86-95, 20040101
- Eco-physiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by MAR-FISH, Applied and Environmental Microbiology, 70(3), 1641-1650, 20040301
- MAR-FISH-An Ecophysiological approach to link phylogenetic affiliation and in situ metabolic activity of microorganisms at a single-cell resolution, Microbes and Environments, 19(2), 83-98, 20040601
- Effects of hydroxylamine on microbial community structure and function of autotrophic nitrifying biofilms determined by in situ hybridization and the use of microelectrodes., Water Science and Technology, 49(11-12), 61-68, 20040801
- Fate of C-14-labeled microbial products derived from nitrifying bacteria in autotrophic nitrifying biofilms, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(7), 3987-3994, 20050701
- Eco-physiology of autotrophic nitrifying biofilms, WATER SCIENCE AND TECHNOLOGY, 52(7), 225-232, 20051001
- Community structure, abundance, and in situ activity of nitrifying bacteria in river sediments as determined by the combined use of molecular techniques and microelectrodes, ENVIRONMENTAL SCIENCE & TECHNOLOGY, 40(5), 1532-1539, 20060301
- Community structures and activities of nitrifying and denitrifying bacteria in industrial wastewater-treating biofilms, BIOTECHNOLOGY AND BIOENGINEERING, 94(4), 762-772, 20060705
- Population dynamics and in situ kinetics of nitrifying bacteria in autotrophic nitrifying biofilms as determined by real-time quantitative PCR, BIOTECHNOLOGY AND BIOENGINEERING, 94(6), 1111-1121, 20060820
- Quantification of anaerobic ammonium-oxidizing bacteria in enrichment cultures by real-time PCR, WATER RESEARCH, 41(4), 785-794, 20070201
- Development of high-rate anaerobic ammonium-oxidizing (anammox) biofilm reactors, WATER RESEARCH, 41(8), 1623-1634, 20070401
- Development of a super high-rate Anammox reactor and in situ analysis of biofilm structure and function, WATER SCIENCE AND TECHNOLOGY, 55(8-9), 9-17, 20070401
- Estimation of the emission factors of PAHs by traffic with the model of atmospheric dispersion and deposition from heavy traffic road, WATER SCIENCE AND TECHNOLOGY, 56(1), 233-242, 20070401
- ★, In situ activity and spatial organization of anaerobic ammonium-oxidizing (anammox) bacteria in biofilms, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 73(15), 4931-4939, 20070801
- Estimation of river discharge loadings of PAHs in a suburban river in
Hiroshima Prefecture, Japan., Journal of Water and Environment Technology, 7(2), 109-120, 20090601
- Nitro-PAHs and PAHs in Atmospheric Particulate Matters and Sea Sediments in Hiroshima Bay Area, Japan, WATER AIR AND SOIL POLLUTION, 207(1-4), 263-271, 20100301
- Biological oxidation of dissolved methane in effluents from anaerobic reactors using a down-flow hanging sponge reactor, WATER RESEARCH, 44(5), 1409-1418, 20100301
- Modelling of wet deposition of atmospheric polycyclic aromatic hydrocarbons by the consecutive measurements in an urban area, Japan, WATER SCIENCE AND TECHNOLOGY, 62(8), 1922-1930, 20100801
- ★, A POLYPHASIC APPROACH TO STUDY ECOPHYSIOLOGY OF COMPLEX MULTISPECIES NITRIFYING BIOFILMS, METHODS IN ENZYMOLOGY, VOL 46: RESEARCH ON NITRIFICATION AND RELATED PROCESSES, PT B, 496, 163-184, 2011
- ★, Enrichment of marine anammox bacteria in Hiroshima Bay sediments, WATER SCIENCE AND TECHNOLOGY, 63(5), 964-969, 20110301
- ★, Enrichment Using an Up-flow Column Reactor and Community Structure of Marine Anammox Bacteria from Coastal Sediment, MICROBES AND ENVIRONMENTS, 26(1), 67-73, 20110305
- Enrichment and identification of methane-oxidizing bacteria by using down-flow hanging sponge bioreactors under low methane concentration, ANNALS OF MICROBIOLOGY, 61(3), 683-687, 20110901
- Dissolved methane oxidation and competition for oxygen in down-flow hanging sponge reactor for post-treatment of anaerobic wastewater treatment, BIORESOURCE TECHNOLOGY, 102(22), 10299-10304, 20111101
- ★, Development of anammox reactor equipped with a degassing membrane to improve biomass retention, WATER SCIENCE AND TECHNOLOGY, 66(2), 451-456, 20120701
- Influence of temperature and salinity on microbial structure of marine anammox bacteria, WATER SCIENCE AND TECHNOLOGY, 66(5), 958-964, 20120901
- PAHs concentration and toxicity in organic solvent extracts of atmospheric particulate matter and sea sediments, WATER SCIENCE AND TECHNOLOGY, 66(5), 983-992, 20120901
- Anaerobic treatment of municipal wastewater at ambient temperature: Analysis of archaeal community structure and recovery of dissolved methane, WATER RESEARCH, 46(17), 5756-5764, 20121101
- ★, Ecophysiological role and function of uncultured Chloroflexi in an anammox reactor, WATER SCIENCE AND TECHNOLOGY, 66(12), 2556-2561, 20121201
- Photocatalytic decomposition of atmospheric toxic substances on the TiO2-loaded glasses set on the roadside of a highway, Journal of Water and Environment Technology, 10(4), 399-408, 20121201
- Phosphate recovery as concentrated solution from treated wastewater by a PAO-enriched biofilm reactor, WATER RESEARCH, 47(6), 2025-2032, 20130415
- ★, High and stable substrate specificities of microorganisms in enhanced biological phosphorus removal plants, ENVIRONMENTAL MICROBIOLOGY, 15(6), 1821-1831, 20130601
- ★, Physiological Characterization of an Anaerobic Ammonium-Oxidizing Bacterium Belonging to the Candidatus Scalindua" Group", APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 79(13), 4145-4148, 20130701
- Cultivation of Planktonic Anaerobic Ammonium Oxidation (Anammox) Bacteria Using Membrane Bioreactor, MICROBES AND ENVIRONMENTS, 28(4), 436-443, 20131220
- Hydrogen sulfide generation suppression by nitrate addition – application to solid waste landfill site, American Journal of Environmental Protection, 3(5), 267-274, 20141101
- Biological oxidation of Mn(II) coupled with nitrification for removal and recovery of minor metals by downflow hanging sponge reactor, WATER RESEARCH, 68, 545-553, 20150101
- Suppressing hydrogen sulfide generation by nitrate or oxygen addition in column percolation experiment, American Journal of Environmental Protection, 4(1), 55-61, 20150201
- ★, Biomass Yield Efficiency of the Marine Anammox Bacterium, Candidatus Scalindua sp.," is Affected by Salinity", MICROBES AND ENVIRONMENTS, 30(1), 86-91, 20150213
- Physiological characterization of anaerobic ammonium oxidizing bacterium CandidatusJettenia caeni'", ENVIRONMENTAL MICROBIOLOGY, 17(6), 2172-2189, 20150601
- Loading and removal of PAHs in a wastewater treatment plant in a separated sewer system, WATER RESEARCH, 80, 337-345, 20150901
- Characterisation of the in situ ecophysiology of novel phylotypes in nutrient removal activated sludge treatment plants, PLOS ONE, 1-13, 20150904
- PAH contents in road dust on principal roads collected nationwide in Japan and their influential factors, WATER SCIENCE AND TECHNOLOGY, 72(7), 1062-1071, 20151018
- ★, Nitrogen removal using an anammox membrane bioreactor at low temperature., Water Science & Technology, 72(12), 2148-2153, 20151218
- ★, Phylogenetic diversity and ecophysiology of candidate phylum Saccharibacteria in activated sludge., FEMS Microbiology Ecology, 92(6), 1-11, 20160601
- ★, Effects of organic matter in livestock manure digester liquid on microbial community structure and in situ activity of anammox granules., Chemosphere, 159, 300-307, 20160613
- Source identification of nitrous oxide emission pathways from a single-stage nitritation-anammox granular reactor, Water Research, 102, 147-157, 20161001
- Dominant Candidatus Accumulibacter phosphatis enriched in response to phosphate concentrations in EBPR process., Microbes and Environments, 32(3), 260-267, 20170927
- Genetic diversity of marine anaerobic ammonium-oxidizing bacteria as revealed by genomic and proteomic analyses of Candidatus Scalindua japonica'", ENVIRONMENTAL MICROBIOLOGY REPORTS, 9(5), 550-561, 20171001
- Concentrated landfill leachate treatment with a combined system including electro-ozonation and composite adsorbent augmented sequencing batch reactor process, PROCESS SAFETY AND ENVIRONMENTAL PROTECTION, 111, 253-262, 20171001
- Loading and removal of PAHs, fragrance compounds, triclosan and toxicity by composting process from sewage sludge, SCIENCE OF THE TOTAL ENVIRONMENT, 605, 860-866, 20171215
- Production of biogenic manganese oxides coupled with methane oxidation in a bioreactor for removing metals from wastewater, WATER RESEARCH, 130, 224-233, 20180301
- Draft genome sequence of Mn(II)-oxidizing Pseudomonas resinovorans strain MO-1., Genome Announcements, 6(11), e00088-18-e00088-18, 20180301
- ★, Specificities and Efficiencies of Primers Targeting Candidatus Phylum Saccharibacteria in Activated Sludge, MATERIALS, 11(7), 20180701
- Pollutant Removal from Synthetic Aqueous Solutions with a Combined Electrochemical Oxidation and Adsorption Method, INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 15(7), 20180701
- ★, Effects of Salts on the Activity and Growth of "Candidatus Scalindua sp.", a Marine Anammox Bacterium, MICROBES AND ENVIRONMENTS, 33(3), 336-339, 20180930
- Pollutants removal from synthetic wastewater by the combined electrochemical, adsorption and sequencing batch reactor (SBR), ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY, 161, 137-144, 20181015
- Biogas purification performance of new water scrubber packed with sponge carriers, JOURNAL OF CLEANER PRODUCTION, 214, 103-111, 20190320
- Investigation of prospective factors that control Kouleothrix (Type 1851) filamentous bacterial abundance and their correlation with sludge settleability in full-scale wastewater treatment plants, PROCESS SAFETY AND ENVIRONMENTAL PROTECTION, 124, 137-142, 201904
- Stormwater inflow loading of polycyclic aromatic hydrocarbons into urban domestic wastewater treatment plant for separate sewer system, WATER SCIENCE AND TECHNOLOGY, 79(7), 1426-1436, 20190401
- Integrated biological-physical process for biogas purification effluent treatment, JOURNAL OF ENVIRONMENTAL SCIENCES-CHINA, 83, 110-122, 20190901
- Dual nitrogen and oxygen isotope fractionation during anaerobic ammonium oxidation by anammox bacteria, ISME JOURNAL, 13(10), 2426-2436, 20191001
- Degradation and volatilization process of fragrance materials and triclosan in wastewater treatment plant - Comparison between field survey and laboratory experiment -, ENVIRONMENTAL TECHNOLOGY & INNOVATION, 16, 20191101
- Cross-linked chitosan/zeolite as a fixed-bed column for organic micropollutants removal from aqueous solution, optimization with RSM and artificial neural network, JOURNAL OF ENVIRONMENTAL MANAGEMENT, 250, 20191115
- Comprehensive review of polycyclic aromatic hydrocarbons in water sources, their effects and treatments, SCIENCE OF THE TOTAL ENVIRONMENT, 696, 20191215
- Mn(II) oxidation and manganese-oxide reduction on the decolorization of an azo dye, INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 146, 20200101
- Integrated anammox-biochar in synthetic wastewater treatment: Performance and optimization by artificial neural network, JOURNAL OF CLEANER PRODUCTION, 243, 20200101
- Anti-bacterial Effects of MnO2 on the Enrichment of Manganese-oxidizing Bacteria in Downflow Hanging Sponge Reactors, MICROBES AND ENVIRONMENTS, 35(4), 20200101
- Multiple organic substrates support Mn(II) removal with enrichment of Mn(II)-oxidizing bacteria, JOURNAL OF ENVIRONMENTAL MANAGEMENT, 259, 20200401
- PAHs emission source analysis for air and water environments by isomer ratios - Comparison by modified Cohen's d, SCIENCE OF THE TOTAL ENVIRONMENT, 715, 20200501
- Pesticides in aquatic environments and their removal by adsorption methods, CHEMOSPHERE, 253, 20200801
- Bioelectrical methane production with an ammonium oxidative reaction under the no organic substance condition, Microbes and Environments, 36(2), 20210601
- ★, Cometabolism of the Superphylum Patescibacteria with Anammox Bacteria in a Long-Term Freshwater Anammox Column Reactor, WATER, 13(2), 20210102
- Treatment of landfill leachate with different techniques: an overview, WATER REUSE, 11(1), 66-96, 20210301
- Triggering Growth via Growth Initiation Factors in Nature: A Putative Mechanism for in situ Cultivation of Previously Uncultivated Microorganisms, FRONTIERS IN MICROBIOLOGY, 12, 20210504
- Performance optimization of a chitosan/anammox reactor in nitrogen removal from synthetic wastewater, JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING, 9(3), 20210601
- ★, Reactor performance and microbial community structure of single-stage partial nitritation anammox membrane bioreactors inoculated with Brocadia and Scalindua enrichment cultures, Biochemical Engineering Journal, 170, 20210601
- Effects of recirculating aquaculture system wastewater on anammox performance and community structure, Processes, 9, 20210721
- Photodegradation of fragrance materials and triclosan in water: Direct photolysis and photosensitized degradation, Environmental Technology & Innovation, 23, 20210801
- Mutualistic relationship between Nitrospira and concomitant heterotrophs, Environmental Microbiology Reports, 14, 130-137, 20220201
- Environmental factors affecting the community of methane-oxidizing bacteria, Microbes and Environments, 37, ME21074-ME21074, 20220301
- Biological methane production coupled with sulfur oxidation in a microbial electrosynthesis system without organic substrates, Journal of Environmental Sciences, 116, 68-78, 20220601
- ★, Metabolic potential of the superphylum Patescibacteria reconstructed from activated sludge samples from a municipal wastewater treatment plant., Microbes and Environments, 37(3), ME22012-ME22012, 20230601
- Growth of nitrite-oxidizing Nitrospira and ammonia-oxidizing Nitrosomonas in marine recirculating trickling biofilter reactors, Environmental Microbiology, 24(8), 3735-3750, 20220801
- Cultivation of previously uncultured sponge-associated bacteria using advanced cultivation techniques: A perspective on possible key mechanisms, FRONTIERS IN MARINE SCIENCE, 9, 20220830
- Indoor thermal environment and energy performance in a central air heating system using a heat pump for a house with underfloor space for heat distribution, Building Services Engineering Research and Technology, 43(6), 755-766, 20221101
- Contaminant Removal from Wastewater by Microalgal Photobioreactors and Modeling by Artificial Neural Network, WATER, 14(24), 20221201
- Influence of pH and concentration on the growth of bacteria-fungus and benzo[a]pyrene degradation, ENVIRONMENTAL TECHNOLOGY & INNOVATION, 29, 20230201
- New microbial electrosynthesis system for methane production from carbon dioxide coupled with oxidation of sulfide to sulfate, Journal of Environmental Sciences (China), 125, 786-797, 20230301
- ★, Candidatus Scalindua, a Biological Solution to Treat Saline Recirculating Aquaculture System Wastewater, Processes, 11(3), 20230301
- Detection of domestic-use chemicals in urban storm drains during dry days in a separated sewer area, Environmental Science: Water Research and Technology, 20230301
Publications such as books
- 2022/02/01, Wastewater Treatment: Current and Future Techniques, Cometabolism of the superphylum Patescibacteria with anammox bacteria in a long-term freshwater anammox column reactor, 2022, 202202, Scholarly Book, Joint work, English, Suguru Hosokawa, Kyohei Kuroda, Takashi Narihiro, Yoshiteru Aoi, Noriatsu Ozaki, Akiyoshi Ohashi, Tomonori Kindaichi, 978-3-0365-3274-5, 252, 13
Awards
- 2022/11/03, Research Paper Award 2021 Of the Microbes and Environments, 日本微生物生態学会 2021年M&E論文賞選考委員会 Editor in Chies, Bioelectrical Methane Production with an Ammonium Oxidative Reaction under the No Organic Substance Condition
- 2007/09, The Best Poster Award, Japanese Society of Microbial Ecology, In situ physiology of candidate division TM7 in a wastewater treatment plant
- 2006/08, Best Poster Award, International Society for Microbial Ecology, Microbial community structure in a super high-rate ANAMMOX biofilm
Patented
- Patent, JP6719092, 2020/06/18
- Patent, JP6651118, 2020/01/24
- Patent, JP6016062, 2016/10/07
- Patent, JP5582388, 2014/07/25
- Patent, JP5004105, 2012/06/01