Last Updated :2023/06/01

Affiliations, Positions
Hiroshima University, Associate Professor
Web Site
Biophysics/Theoretical Biology/Mathematical Modeling

Basic Information

Academic Degrees

  • Osaka University
  • Osaka University

Research Keywords

  • complex systems
  • mathematical biology
  • biophysics

Educational Activity

Course in Charge

  1. 2023, Undergraduate Education, 3Term, Introduction to Information Mathematics
  2. 2023, Undergraduate Education, 2Term, Theory of Complex Systems
  3. 2023, Undergraduate Education, First Semester, Special Study of Mathematics and Informatics for Graduation
  4. 2023, Undergraduate Education, Second Semester, Special Study of Mathematics and Informatics for Graduation
  5. 2023, Graduate Education (Master's Program) , Academic Year, Research for Academic Degree Dissertation in Mathematical and Life Sciences
  6. 2023, Graduate Education (Master's Program) , 3Term, Mathematical Modeling A
  7. 2023, Graduate Education (Master's Program) , 3Term, Special Lecture on Mathematical and Life Sciences B
  8. 2023, Graduate Education (Master's Program) , First Semester, Exercises in Applied Mathematics and Computational Science A
  9. 2023, Graduate Education (Master's Program) , Second Semester, Exercises in Applied Mathematics and Computational Science B
  10. 2023, Graduate Education (Doctoral Program) , 3Term, Special Lecture on Mathematical and Life Sciences F
  11. 2023, Graduate Education (Master's Program) , 1Term, Advanced Technologies for Life Science

Research Activities

Academic Papers

  1. A method for morphological feature extraction based on variational auto-encoder : an application to mandible shape, bioRxiv, 20220519
  2. Intercellular exchange of Wnt ligands reduces cell population heterogeneity in embryogenesis, Research Square, 20220202
  3. Microtopographical guidance of macropinocytic signaling patches, Proceedings of the National Academy of Sciences, 118(50), 20211214
  4. ★, Three-dimensional morphodynamic simulations of macropinocytic cups, iScience, 24(10), 103087-103087, 202110
  5. Comparative mapping of crawling-cell morphodynamics in deep learning-based feature space, PLOS Computational Biology, 17(8), e1009237-e1009237, 20210812
  6. Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem, PLOS Computational Biology, 17(6), 20210623
  7. Advantage of Leakage of Essential Metabolites for Cells, Physical Review Letters, 124(4), 20200128
  8. Embedding dual function into molecular motors through collective motion, SCIENTIFIC REPORTS, 7, 201703
  9. Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates, PLOS COMPUTATIONAL BIOLOGY, 12(10), 201610
  10. Motif analysis for small-number effects in chemical reaction dynamics, JOURNAL OF CHEMICAL PHYSICS, 145(9), 201609
  11. Theoretical analysis of discreteness-induced transition in autocatalytic reaction dynamics, PHYSICAL REVIEW E, 91(2), 201502
  12. Multicanonical MCMC for sampling rare events: an illustrative review, ANNALS OF THE INSTITUTE OF STATISTICAL MATHEMATICS, 66(3), 611-645, 201406
  13. Evolution of genetic redundancy: the relevance of complexity in genotype-phenotype mapping, NEW JOURNAL OF PHYSICS, 16, 201406
  14. Baldwin effect under multipeaked fitness landscapes: Phenotypic fluctuation accelerates evolutionary rate, PHYSICAL REVIEW E, 87(5), 20130502
  15. Robustness leads close to the edge of chaos in coupled map networks: toward the understanding of biological networks, NEW JOURNAL OF PHYSICS, 15, 201305
  16. Probability of graphs with large spectral gap by multicanonical Monte Carlo, COMPUTER PHYSICS COMMUNICATIONS, 182(1), 223-225, 201101
  17. Multicanonical sampling of rare events in random matrices, PHYSICAL REVIEW E, 82(3), 201009

External Funds

Acceptance Results of Competitive Funds

  1. 2021/04/01, 2024/03/31
  2. Grants-in-Aid for Scientific Research Grant-in-Aid for Transformative Research Areas (A), A theoretical study of 3D morphogenesis shaped by tissue-scale cytoskeletal alignment, 2021/09, 2023/03
  3. 2018/04, 2021/03
  4. 2014/04, 2016/03